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pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

Frederick A Matsen, Robin B Kodner, E Virginia Armbrust

Journal:

BMC Bioinformatics

Année:

2010

Langue:

english

Fichier:

PDF, 1.77 MB

english, 2010

Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges

Adam Monier, Rory M. Welsh, Chelle Gentemann, George Weinstock, Erica Sodergren, E. Virginia Armbrust, Jonathan A. Eisen, Alexandra Z. Worden

Journal:

Environmental Microbiology

Année:

2012

Langue:

english

Fichier:

PDF, 4.84 MB

english, 2012

RELATIONSHIPS BETWEEN GROWTH RATE, CELL SIZE, AND INDUCTION OF SPERMATOGENESIS IN THE CENTRIC DIATOM THALASSIOSIRA WEISSFLOGII (BACILLARIOPHYTA)

Peter Von Dassow, Victor A. Chepurnov, E. Virginia Armbrust

Journal:

Journal of Phycology

Année:

2006

Langue:

english

Fichier:

PDF, 522 KB

english, 2006

Genomic Insights into Marine Microalgae

Parker, Micaela S., Mock, Thomas, Armbrust, E. Virginia

Journal:

Annual Review of Genetics

Année:

2008

Langue:

english

Fichier:

PDF, 530 KB

english, 2008

Determination of four forms of vitamin B 12 and other B vitamins in seawater by liquid chromatography/tandem mass spectrometry

Heal, Katherine R., Carlson, Laura Truxal, Devol, Allan H., Armbrust, E. Virginia, Moffett, James W., Stahl, David A., Ingalls, Anitra E.

Journal:

Rapid Communications in Mass Spectrometry

Année:

2014

Langue:

english

Fichier:

PDF, 1.03 MB

english, 2014

Unveiling a phytoplankton hotspot at a narrow boundary between coastal and offshore waters

Francois Ribalet, Adrian Marchetti, Katherine A. Hubbard, Kristina Brown, Colleen A. Durkin, Rhonda Morales, Marie Robert, Jarred E. Swalwell, Philippe D. Tortell and E. Virginia Armbrust

Journal:

Proceedings of the National Academy of Sciences

Année:

2010

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2010

The evolution of silicon transporters in diatoms

Durkin, Colleen A., Koester, Julie A., Bender, Sara J., Armbrust, E. Virginia

Journal:

Journal of Phycology

Année:

2016

Langue:

english

Fichier:

PDF, 672 KB

english, 2016

Transcriptional responses of three model diatoms to nitrate limitation of growth

Bender, Sara J., Durkin, Colleen A., Berthiaume, Chris T., Morales, Rhonda L., Armbrust, E. Virginia

Journal:

Frontiers in Marine Science

Année:

2014

Langue:

english

Fichier:

PDF, 1.66 MB

english, 2014

Kīlauea lava fuels phytoplankton bloom in the North Pacific Ocean

Wilson, Samuel T., Hawco, Nicholas J., Armbrust, E. Virginia, Barone, Benedetto, Björkman, Karin M., Boysen, Angela K., Burgos, Macarena, Burrell, Timothy J., Casey, John R., DeLong, Edward F., Dugenn

Journal:

Science

Année:

2019

Langue:

english

Fichier:

PDF, 8.40 MB

english, 2019

Building an OptIPlanet collaboratory to support microbial metagenomics

Larry Smarr, Paul Gilna, Phil Papadopoulos, Thomas A. DeFanti, Greg Hidley, John Wooley, E. Virginia Armbrust, Forest Rohwer, Eric Frost

Journal:

Future Generation Computer Systems

Année:

2009

Langue:

english

Fichier:

PDF, 3.77 MB

english, 2009

STRUCTURAL FEATURES OF NUCLEAR GENES IN THE CENTRIC DIATOM THALASSIOSIRA WEISSFLOGII (BACILLARIOPHYCEAE)

E. Virginia Armbrust

Journal:

Journal of Phycology

Année:

2000

Langue:

english

Fichier:

PDF, 162 KB

english, 2000

IDENTIFICATION AND DNA SEQUENCE OF A NEW H+-ATPase IN THE UNICELLULAR GREEN ALGA CHLAMYDOMONAS REINHARDTII (CHLOROPHYCEAE)

A. Malcolm Campbell, Alison J. Coble, Lindsay D. Cohen, Toh Hean Ch'Ng, Kristin M. Russo, Elizabeth M. Long, E. Virginia Armbrust

Journal:

Journal of Phycology

Année:

2001

Langue:

english

Fichier:

PDF, 572 KB

english, 2001

GENETIC DIFFERENTIATION AMONG POPULATIONS OF THE PLANKTONIC MARINE DIATOM DITYLUM BRIGHTWELLII (BACILLARIOPHYCEAE)

Tatiana A. Rynearson, E. Virginia Armbrust

Journal:

Journal of Phycology

Année:

2004

Langue:

english

Fichier:

PDF, 222 KB

english, 2004

Population structure of the planktonic copepodCalanus pacificusin the North Pacific Ocean

Mikelle L. Nuwer, Bruce W. Frost, E. Virginia Armbrust

Journal:

Marine Biology

Année:

2008

Langue:

english

Fichier:

PDF, 332 KB

english, 2008

Chloroplast genomes of the diatomsPhaeodactylum tricornutumandThalassiosira pseudonana: comparison with other plastid genomes of the red lineage

Marie-Pierre Oudot-Le Secq, Jane Grimwood, Harris Shapiro, E. Virginia Armbrust, Chris Bowler, Beverley R. Green

Journal:

Molecular Genetics and Genomics

Année:

2007

Langue:

english

Fichier:

PDF, 585 KB

english, 2007

Maintenance of clonal diversity during a spring bloom of the centric diatom Ditylum brightwellii

TATIANA A. RYNEARSON, E. VIRGINIA ARMBRUST

Journal:

Molecular Ecology

Année:

2005

Langue:

english

Fichier:

PDF, 216 KB

english, 2005

INDUCTION OF PHOTORESPIRATION BY LIGHT IN THE CENTRIC DIATOM THALASSIOSIRA WEISSFLOGII (BACILLARIOPHYCEAE): MOLECULAR CHARACTERIZATION AND PHYSIOLOGICAL CONSEQUENCES

Micaela Schnitzler Parker, E. Virginia Armbrust, Jonah Piovia-Scott, Richard G. Keil

Journal:

Journal of Phycology

Année:

2004

Langue:

english

Fichier:

PDF, 427 KB

english, 2004

OOGAMOUS REPRODUCTION, WITH TWO-STEP AUXOSPORULATION, IN THE CENTRIC DIATOM THALASSIOSIRA PUNCTIGERA (BACILLARIOPHYTA)

Victor A. Chepurnov, David G. Mann, Peter Von Dassow, E. Virginia Armbrust, Koen Sabbe, Renaat Dasseville, Wim Vyverman

Journal:

Journal of Phycology

Année:

2006

Langue:

english

Fichier:

PDF, 1.58 MB

english, 2006

INTER- AND INTRASPECIFIC RELATIONSHIPS BETWEEN NUCLEAR DNA CONTENT AND CELL SIZE IN SELECTED MEMBERS OF THE CENTRIC DIATOM GENUS THALASSIOSIRA (BACILLARIOPHYCEAE)

Peter Von Dassow, Timothy W. Petersen, Victor A. Chepurnov, E. Virginia Armbrust

Journal:

Journal of Phycology

Année:

2008

Langue:

english

Fichier:

PDF, 553 KB

english, 2008

INTER- AND INTRASPECIFIC COMMUNITY STRUCTURE WITHIN THE DIATOM GENUS PSEUDO-NITZSCHIA (BACILLARIOPHYCEAE)

Katherine A. Hubbard, Gabrielle Rocap, E. Virginia Armbrust

Journal:

Journal of Phycology

Année:

2008

Langue:

english

Fichier:

PDF, 387 KB

english, 2008

IDENTIFICATION AND ASSESSMENT OF DOMOIC ACID PRODUCTION IN OCEANIC PSEUDO-NITZSCHIA (BACILLARIOPHYCEAE) FROM IRON-LIMITED WATERS IN THE NORTHEAST SUBARCTIC PACIFIC

Adrian Marchetti, Nina Lundholm, Yuichi Kotaki, Katherine Hubbard, Paul J. Harrison, E. Virginia Armbrust

Journal:

Journal of Phycology

Année:

2008

Langue:

english

Fichier:

PDF, 610 KB

english, 2008

MASS SEXUAL REPRODUCTION IN THE TOXIGENIC DIATOMS PSEUDO-NITZSCHIA AUSTRALIS AND P. PUNGENS (BACILLARIOPHYCEAE) ON THE WASHINGTON COAST, USA

Karie E. Holtermann, Stephen S. Bates, Vera L. Trainer, Anthony Odell, E. Virginia Armbrust

Journal:

Journal of Phycology

Année:

2010

Langue:

english

Fichier:

PDF, 481 KB

english, 2010

Ferritin is used for iron storage in bloom-forming marine pennate diatoms

Marchetti, Adrian, Parker, Micaela S., Moccia, Lauren P., Lin, Ellen O., Arrieta, Angele L., Ribalet, Francois, Murphy, Michael E. P., Maldonado, Maria T., Armbrust, E. Virginia

Journal:

Nature

Année:

2008

Langue:

english

Fichier:

PDF, 333 KB

english, 2008

The life of diatoms in the world's oceans

Armbrust, E. Virginia

Journal:

Nature

Année:

2009

Langue:

english

Fichier:

PDF, 4.23 MB

english, 2009

Coupled Effects of Light and Nitrogen Source on the Urea Cycle and Nitrogen Metabolism over a Diel Cycle in the Marine Diatom Thalassiosira pseudonana

Sara J. Bender, Micaela S. Parker, E. Virginia Armbrust

Journal:

Protist

Année:

2012

Langue:

english

Fichier:

PDF, 835 KB

english, 2012

ROLE OF LIGHT AND THE CELL CYCLE ON THE INDUCTION OF SPERMATOGENESIS IN A CENTRIC DIATOM

E. Virginia Armbrust, Sallie W. Chisholm, Robert J. Olson

Journal:

Journal of Phycology

Année:

1990

Fichier:

PDF, 3.05 MB

1990

PATTERNS OF CELL SIZE CHANGE IN A MARINE CENTRIC DIATOM: VARIABILITY EVOLVING FROM CLONAL ISOLATES

E. Virginia Armbrust, Sallie W. Chisholm

Journal:

Journal of Phycology

Année:

1992

Fichier:

PDF, 1.68 MB

1992

Genome size differentiates co-occurring populations of the planktonic diatomDitylum brightwellii(Bacillariophyta)

Julie A Koester, Jarred E Swalwell, Peter von Dassow, E Virginia Armbrust

Journal:

BMC Evolutionary Biology

Année:

2010

Langue:

english

Fichier:

PDF, 622 KB

english, 2010

Phylogeography of Calanus helgolandicus and the Black Sea copepod Calanus euxinus, with notes on Pseudocalanus elongatus (Copepoda, Calanoida)

Ebru Unal, Bruce W. Frost, Virginia Armbrust, Ahmet E. Kideys

Journal:

Deep Sea Research Part II: Topical Studies in Oceanography

Année:

2006

Langue:

english

Fichier:

PDF, 370 KB

english, 2006

Accelerate Synthesis in Ecology and Environmental Sciences

Stephen R. Carpenter, E. Virginia Armbrust, Peter W. Arzberger, F. Stuart Chapin III, James J. Elser, Edward J. Hackett, Anthony R. Ives, Peter M. Kareiva, Mathew A. Leibold, Per Lundberg, Marc Mangel

Journal:

BioScience

Année:

2009

Langue:

english

Fichier:

PDF, 117 KB

english, 2009

Metapopulation Structure in the Planktonic Diatom Ditylum brightwellii (Bacillariophyceae)

Tatiana A. Rynearson, Ellen O. Lin, E. Virginia Armbrust

Journal:

Protist

Année:

2009

Langue:

english

Fichier:

PDF, 240 KB

english, 2009

SYNERGISTIC EFFECTS OF LIGHT, TEMPERATURE, AND NITROGEN SOURCE ON TRANSCRIPTION OF GENES FOR CARBON AND NITROGEN METABOLISM IN THE CENTRIC DIATOM THALASSIOSIRA PSEUDONANA (BACILLARIOPHYCEAE)

Micaela Schnitzler Parker, E. Virginia Armbrust

Journal:

Journal of Phycology

Année:

2005

Langue:

english

Fichier:

PDF, 334 KB

english, 2005

A mating type-linked gene cluster expressed in Chlamydomonas zygotes participates in the uniparental inheritance of the chloroplast genome

E.Virginia Armbrust, Patrick J. Ferris, Ursula W. Goodenough

Journal:

Cell

Année:

1993

Langue:

english

Fichier:

PDF, 4.93 MB

english, 1993

Frustule-related gene transcription and the influence of diatom community composition on silica precipitation in an iron-limited environment

Durkin, Colleen A., Marchetti, Adrian, Bender, Sara J., Truong, Tiffany, Morales, Rhonda, Mock, Thomas, Armbrust, E. Virginia

Journal:

Limnology and Oceanography

Année:

2012

Langue:

english

Fichier:

PDF, 1.56 MB

english, 2012

Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea

Horak, Rachel E A, Qin, Wei, Schauer, Andy J, Armbrust, E Virginia, Ingalls, Anitra E, Moffett, James W, Stahl, David A, Devol, Allan H

Journal:

The ISME Journal

Année:

2013

Langue:

english

Fichier:

PDF, 809 KB

english, 2013

Acclimation conditions modify physiological response of the diatom Thalassiosira pseudonana to elevated CO 2 concentrations in a nitrate-limited chemostat

Hennon, Gwenn M. M., Quay, Paul, Morales, Rhonda L., Swanson, Lyndsey M., Virginia Armbrust, E., Wood, M.

Journal:

Journal of Phycology

Année:

2014

Langue:

english

Fichier:

PDF, 519 KB

english, 2014

The genetic potential for key biogeochemical processes in Arctic frost flowers and young sea ice revealed by metagenomic analysis

Bowman, Jeff S., Berthiaume, Chris T., Armbrust, E. Virginia, Deming, Jody W.

Journal:

FEMS Microbiology Ecology

Année:

2014

Langue:

english

Fichier:

PDF, 811 KB

english, 2014

Assessment of the potential for copper limitation of ammonia oxidation by Archaea in a dynamic estuary

Jacquot, Jeremy E., Horak, Rachel E.A., Amin, Shady A., Devol, Allan H., Ingalls, Anitra E., Armbrust, E. Virginia, Stahl, David A., Moffett, James W.

Journal:

Marine Chemistry

Année:

2014

Langue:

english

Fichier:

PDF, 1.45 MB

english, 2014

The Effects of Darkness and Anaerobiosis on Dinoflagellate Cyst Germination

Donald M. Anderson, Craig D. Taylor and E. Virginia Armbrust

Journal:

Limnology and Oceanography

Année:

1987

Langue:

english

Fichier:

PDF, 1.52 MB

english, 1987

Pigments, Size, and Distribution of Synechococcus in the North Atlantic and Pacific Oceans

Robert J. Olson, Sallie W. Chisholm, Erik R. Zettler and E. Virginia Armbrust

Journal:

Limnology and Oceanography

Année:

1990

Langue:

english

Fichier:

PDF, 1.65 MB

english, 1990

DNA Fingerprinting Reveals Extensive Genetic Diversity in a Field Population of the Centric Diatom Ditylum brightwellii

Tatiana A. Rynearson and E. Virginia Armbrust

Journal:

Limnology and Oceanography

Année:

2000

Langue:

english

Fichier:

PDF, 1.79 MB

english, 2000

Collaborative Science Workflows in SQL

Howe, Bill, Halperin, Daniel, Ribalet, Francois, Chitnis, Sagar, Armbrust, E. Virginia

Journal:

Computing in Science & Engineering

Année:

2013

Langue:

english

Fichier:

PDF, 3.42 MB

english, 2013

The production of nitric oxide by marine ammonia-oxidizing archaea and inhibition of archaeal ammonia oxidation by a nitric oxide scavenger

Martens-Habbena, Willm, Qin, Wei, Horak, Rachel E. A., Urakawa, Hidetoshi, Schauer, Andrew J., Moffett, James W., Armbrust, E. Virginia, Ingalls, Anitra E., Devol, Allan H., Stahl, David A.

Journal:

Environmental Microbiology

Année:

2015

Langue:

english

Fichier:

PDF, 966 KB

english, 2015

Plastid proteome prediction for diatoms and other algae with secondary plastids of the red lineage

Gruber, Ansgar, Rocap, Gabrielle, Kroth, Peter G., Armbrust, E. Virginia, Mock, Thomas

Journal:

The Plant Journal

Année:

2015

Langue:

english

Fichier:

PDF, 688 KB

english, 2015

The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing

Keeling, Patrick J., Burki, Fabien, Wilcox, Heather M., Allam, Bassem, Allen, Eric E., Amaral-Zettler, Linda A., Armbrust, E. Virginia, Archibald, John M., Bharti, Arvind K., Bell, Callum J., Beszteri

Journal:

PLoS Biology

Année:

2014

Langue:

english

Fichier:

PDF, 362 KB

english, 2014

Light-driven synchrony of Prochlorococcus growth and mortality in the subtropical Pacific gyre

Ribalet, Francois, Swalwell, Jarred, Clayton, Sophie, Jiménez, Valeria, Sudek, Sebastian, Lin, Yajuan, Johnson, Zackary I., Worden, Alexandra Z., Armbrust, E. Virginia

Journal:

Proceedings of the National Academy of Sciences

Année:

2015

Langue:

english

Fichier:

PDF, 876 KB

english, 2015

Confounding effects of oxygen and temperature on the TEX 86 signature of marine Thaumarchaeota

Qin, Wei, Carlson, Laura T., Armbrust, E. Virginia, Devol, Allan H., Moffett, James W., Stahl, David A., Ingalls, Anitra E.

Journal:

Proceedings of the National Academy of Sciences

Année:

2015

Langue:

english

Fichier:

PDF, 821 KB

english, 2015

Scalable clustering algorithms for continuous environmental flow cytometry

Hyrkas, Jeremy, Clayton, Sophie, Ribalet, Francois, Halperin, Daniel, Virginia Armbrust, E., Howe, Bill

Journal:

Bioinformatics

Année:

2016

Langue:

english

Fichier:

PDF, 549 KB

english, 2016

The effects of darkness and anaerobiosis on dinoflagellate cyst germination

ANDERSON, DONALD M., TAYLOR, CRAIG D., ARMBRUST, E. VIRGINIA

Journal:

Limnology and Oceanography

Année:

1987

Langue:

english

Fichier:

PDF, 1.54 MB

english, 1987

Pigments, size, and distributions of Synechococcus in the North Atlantic and Pacific Oceans

OLSON, ROBERT J., CHISHOLM, SALLIE W., ZETTLER, ERIK R., ARMBRUST, E. VIRGINIA

Journal:

Limnology and Oceanography

Année:

1990

Langue:

english

Fichier:

PDF, 1.53 MB

english, 1990